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RDP Release 10, Update 28 :: Jan 12, 2012 :: 2,110,258  16S rRNAs

link to new window with RDP's latest NAR article

The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial and Archaeal small-subunit 16S rRNA sequences.


RDP Release 10 brings two major changes to the RDP:

  • RDP10 provides new Bacterial and Archaeal alignments with several significant enhancements over the previous RDP 9 alignments.

  • Use of the Infernal secondary-structure based aligner that provides better support for short partial sequences and handles certain sequencing artifacts in a more intuitive manner.

Explore our online analysis tools:


HOVER over any tool item in the menu to see a brief popup description of its features;

CLICK on the tool menu item to begin working with it.

 

cameraIconBe sure to view the video tutorials and visit each tool's help file to use our site to your fullest advantage.




Sponsors:

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Support:


Part of the RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
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RDP News

01/13/2012  RDP 10, update 28 released.
RDP 10.28 contains 2,110,258 aligned 16S rRNA sequences. The hierarchy model used by RDP Classifier has been updated to training set No. 7. There a...

01/11/2012  Liu et al., discusses RDP's Fungal LSU Classifier
Visit doi:10.1128/AEM.06826-11 for more info

12/20/2011  RDP Site Maintence
The RDP main website will be down from 11pm Saturday 12/24 to 3am Sunday 12/25 for maintenance.

12/01/2011  RDP featured in Science Watch, Dec. 2011
Director James Cole answers questions about the RDP Classifier

11/29/2011  Brief Service Interruption
There was a brief power outage from 16:30-17:45 this evening that caused some issues with the RDP sites. The problem has been resolved and all ser...

06/16/2011  RDP User Jobs Slow Turnaround Update
The RDP pyrosequencing site (http://pyro.cme.msu.edu) has been under heavy usage for the past several days (thank you for using our tools!). How...

06/13/2011  RDP Fungal LSU Classifier released
RDP Classifier now works on Fungal LSU sequences

05/27/2011  RDP Poster at BAGECO11
The RDP FunGene Pipeline: tools for gene-targeted metagenomics

05/18/2011  RDP Staff attending ASM New Orleans, May 22-25
Visit with RDP staff at the poster session on Tues. afternoon

05/04/2011  RDP aids its users in making SRA submissions
Don't have your own submission account? Please call us when you're ready to submit.