RIBOSOMAL DATABASE PROJECT - II of the Center for Microbial Ecology at Michigan State University
Release
9.61 ::
May 22, 2008 ::
513,272 16S rRNAs
(More on Release 9 and monthly updates
is available in the release notes.)
07/31/2008
Due to software problem, some user sequences submitted after July 16 could not be retrieved in aligned format. The problem has been fixed and we apologize for the inconvenience. [more]
06/05/2008
RDP posters from ASM now available. The RDP websites will be unavailable the evening of Friday, June 6. [more]
05/22/2008
RDP 9, Update 61 Released. RDP Classifier training data updated. [more]
03/05/2008
RDP 9, Update 59 Released.
This release includes a beta version of the new Taxomatic visualization tool. [more]
06/08/2007
RDP 9, Update 51 Released. It's now possible to find sequences from completed genomes by searching with the GenBank Project ID. [more]
03/22/2007
New video tutorials available in Flash, Quicktime and Windows Media formats. [more]
08/22/2006
Introducing simple chromatograms upload and research buddies to myRDP.
Quality filter can be applied to view only good quality sequences.[more]
03/23/2006
Batch retrieval by GenBank accession numbers available.[more]
02/02/2006
RDP 9, Update 36 Released. ARB import help available. [more]
Please visit http://rdp.cme.msu.edu for the latest RDP Release.
RDP Release 9 will be available for a short period of time for users who need convient access to our Release 9 alignments. This site will recieve no further monthly data updates or added features. You may also contact the RDP if you have needs or concerns regarding RDP Release 9.
RDP Release 10 was released August 1, 2008, and includes all the tools and features of Release 9, plus new Bacterial and Archaeal alignments created using a new alignment strategy. Please read the release notes for a complete list of changes between RDP9 and RDP10.
RDP Analysis Tools
Educational :: Class Assignment Generator - Professors / Instructors: Generate assignments for your class that use RDP Classifier and Seqmatch.
- myRDP - Align and Classify your 16S rRNA sequences. Use the RDP Pipeline to process sequence libraries from raw sequencer output to analysis.
- Hierarchy Browser -
Browse a phylogenetic hierarchy and compile a list of 16S rRNA sequences for download or use. Also browse by Publication or Genome.
- Tree Builder - Create a phylogenetic tree.
- Classifier -
Assign 16S rRNA sequences to our taxonomical hierarchy.
- Library Compare -
Compare two sequence libraries using the RDP Classifier.
- Sequence Match -
Upload your sequence and search for its nearest neighbors.
- Probe Match -
See what your probe targets in our database.
- Other Resources -
Alignment files, ASM posters, user-submitted data.
- Release 8.1 - The old RDP site (Release 8.1). Uses an outdated dataset. Please Note: The RDP 8.1 site will be shutdown soon
Pyrosequencing Pipeline - Process, Align, Cluster, Dereplicate, and convert large amounts of pyrosequencing (454) data. This version of the Pyrosequencing Pipeline handles the V4 region of the 16s rRNA.
The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial small-subunit 16S rRNA sequences.
Sponsors:
Support:
Part of the RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
Questions/comments: rdpstaff@msu.edu
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